PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000225m
Common NameCICLE_v10000225mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 894aa    MW: 99095.7 Da    PI: 7.198
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000225mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-18331430198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k+l+ sd+++ grlvlpk +ae++   +++ e++ l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+++F++++  ++
  Ciclev10000225m 331 FEKILSASDAGRIGRLVLPKACAEAYfpHISQSEGVPLRVQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTITFSRID-PGG 422
                      99**************************777778999***************9989999999***9.********************887.788 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  Ciclev10000225m 423 KLVMGFRK 430
                      78887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-29327431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-20328430IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-23329430No hitNo description
PROSITE profilePS5086310.856331432IPR003340B3 DNA binding domain
SMARTSM010196.4E-21331431IPR003340B3 DNA binding domain
PfamPF023628.2E-16331430IPR003340B3 DNA binding domain
PROSITE profilePS5105013.518595645IPR011124Zinc finger, CW-type
PfamPF074968.4E-9600642IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MGPRICMNPK CRTANTHEWK KGWLLRSGVC ADLCYDCGSA YENFIFCNTF HLEEPGWREC  60
NFCSKRLHCG CRASNSFLEL LDYGGVGCRS CAMSPRLHLI QRDEIPNGFG ALTKKDSDDT  120
QTPMLENRVV GDGTAEGKLT QLCRIMEANE PSFLAPFQRG DTIVSLGQEK REELRLPFVE  180
VGTGFSSPTK LSSRSSKFTK PDGSRSMLDV RDMPESLAQR SSSMSLGVPA GCSNFVPPFS  240
NGAADGREPC KAHPSFQQGQ RSRPILPKPS KTGLTISSET KKSTASQLRI ARPPAEGRGK  300
NHLLPRYWPR ITDQELQQLS GDLNSTIVPL FEKILSASDA GRIGRLVLPK ACAEAYFPHI  360
SQSEGVPLRV QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTITFSRIDP  420
GGKLVMGFRK APIPGDMQDA QTSAITNGCP GESSLSGVTE NLPTVSGYSG HFQMLKGSKD  480
PHIDALSEHL SLAEGDNGWH KSENHGQKTN EDSPQKSLLG MEKKRTRNIG SKSKRLLMHS  540
EEAMELRLTW EEAQDLLRPS PSARPNIVTI EDHEFEEYDE PPVFGKRTVF TARPSGEQEQ  600
WAPCDDCSKW RKLPTDALLP PKWTCSDNVW DSIRCSCSAA EEMIQKDLEN LLRVGRESKK  660
RKIVESQRRD QQNEPSGLDA LATAAVLGDY AGDSGEPSSV GATTTRHPRH RPGCTCIVCI  720
QPPSGKGKHK PTCTCNVCMT VKRRFKTLML RKKRRQSERE VEVAQKNHSD QMGDSEMNGS  780
VKQESVPTSH TDNEISQTKS QTEVAESSSA QIGLDLNCYP NREDMQPEES RVSIMTLDRV  840
ASVPLEDCHP NGLASLSSCM LQQVNNGDHE RLLSDERFLA SVGWGRDQEP NLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-1433041713102DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1741752KRRFKTLMLRKK
2741753KRRFKTLMLRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432020.10.0hypothetical protein CICLE_v10000225mg
RefseqXP_006491930.10.0PREDICTED: B3 domain-containing transcription repressor VAL1
SwissprotQ8W4L50.0VAL1_ARATH; B3 domain-containing transcription repressor VAL1
TrEMBLV4T1N20.0V4T1N2_9R
STRINGPOPTR_0019s15070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69232440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2